IGVFFI3554MKJL

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS7287FFPC(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X046_G2_P047_L003_R1

md5sum

13fda79419b0bd132918212670b5a935

Content MD5sum

537855d3c40e2e5db2123607d3ec2461

File Size

4.6 GB

Submitted File Name

Multiome_ATAC_X046_G2_L002_P047_S14_L003_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

H5VKTDSX7

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

146095801

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM7324LMEY

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, multiple sclerosis, Parkinson's disease

multiplexed sample: Homo sapiens (female, 78 years) putamen tissue associated with Parkinson's disease; Homo sapiens (male, 53 years) middle temporal gyrus tissue; ... and 10 more samples