IGVFFI3545YIRN

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS2905ZOTV(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP008_G6_P057_L003_R1

md5sum

6198331d5a9bed698d9f2024c76d7700

Content MD5sum

7ab572c9f57767fc492c0bcef83cc9a9

File Size

1.2 GB

Submitted File Name

Multiome_ATAC_RP008_G6_L006_P057_S6_L003_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223HGTLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

38847003

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM7190BHUX

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, multiple sclerosis, Parkinson's disease

multiplexed sample: Homo sapiens (male, 69 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (male, 79 years) substantia nigra tissue associated with Parkinson's disease; ... and 10 more samples