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INDEXED
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SequenceFile
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IGVFFI3533ENIY
IGVFFI3533ENIY
preview
validated
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This object is in preview status. Metadata is subject to change until this object is released.
File Set
IGVFDS7624FKBF
(single-nucleus ATAC-seq (10x multiome))
Summary
R3 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
igvf:corces_sequenceFile_ATAC_X046_G8_P047_L003_R3
md5sum
6a94c12f804601a4fdaa6add0c8c0346
Content MD5sum
c3f8f4af0f2123e56ab88650dcb3f03b
File Size
6.8 GB
Submitted File Name
Multiome_ATAC_X046_G8_L008_P047_S20_L003_R3_001.fastq.gz
Checkfiles Version
v20
Sequencing Details
Sequencing Platform
Illumina NovaSeq 6000
Sequencing Run
1
Flowcell ID
H5VKTDSX7
Lane
3
Sequencing Kit
NovaSeq 6000 S4 Reagent Kit v1.5
Illumina Read Type
R3
Average Read Length
49
Read Count
215601212
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM3471DKMI
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
Alzheimer disease
,
cerebral amyloid angiopathy
,
mild cognitive impairment
,
multiple sclerosis
,
Parkinson's disease
multiplexed sample: Homo sapiens (female, 78 years) putamen tissue associated with Parkinson's disease; Homo sapiens (male, 53 years) middle temporal gyrus tissue; ... and 10 more samples
Attribution
Award
HG012076
Principal Investigator(s)
Ansuman Satpathy
Contact P.I.
Ansuman Satpathy
Lab
Ryan Corces, Gladstone Institute UCSF