Home

IGVFFI3529CEGY

released
validated
File Set
IGVFDS9563IPMU(single-nucleus ATAC-seq (10x multiome with MULTI-seq))
Summary
R2 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
ansuman-satpathy:igvf_exp18_atac_10x3_NGS1_r2
md5sum
5b075f921231db0a7879aa30dd50bc86
Content MD5sum
21533f7e3a25d98df69640affd579ddc
File Size
14 GB
Submitted File Name
/oak/stanford/groups/satpathy/users/backup/cmcg/igvf18/ATAC/ATAC3-CMAS23A_S35_L006_R2_001.fastq.gz
Checkfiles Version
v14
Attribution
Ansuman Satpathy, Stanford

Sequencing Details

Sequencing Platform
Illumina NovaSeq X
Sequencing Run
1
Flowcell ID
22FL7YLT4
Lane
1
Sequencing Kit
NovaSeq X Series 25B Reagent Kit
Illumina Read Type
R2
Average Read Length
24
Read Count
787346298

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (female) IMR-90 cell line; Homo sapiens (female) MCF-7 cell line; ... and 17 more samples

Files Derived From This File

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
tsv
fragments
fragments
Ansuman Satpathy, Stanford
5.0 GB
validation exempted

Associated seqspec Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
yaml
seqspec
seqspec of IGVFFI6610ITZE, IGVFFI3529CEGY, IGVFFI5666NKKY, IGVFFI3258KJVF
Ansuman Satpathy, Stanford
1.4 KB
validated