IGVFFI3529AJGI

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS1691KPWU(single-nucleus RNA sequencing assay (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_RNA_X041_G1_P042_L003_R1

md5sum

a27818b6ce4750fad773e1777bd4f4c5

Content MD5sum

2bfd45b0e3dff448acfa6b987460814f

File Size

1.5 GB

Submitted File Name

Multiome_RNA_X041_G1_L001_P042_S11_L003_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

222YMLLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

80817087

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM1990PUGQ

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, multiple sclerosis, Parkinson's disease

multiplexed sample: Homo sapiens (male, 72 years) middle temporal gyrus tissue associated with cerebral amyloid angiopathy; Homo sapiens (female, 82 years) substantia nigra tissue associated with Alzheimer disease, Parkinson's disease, cerebral amyloid angiopathy, multiple sclerosis; ... and 10 more samples