IGVFFI3522JFXK

released

validated

File Set

IGVFDS8301YMSM(CRISPR interference FlowFISH screen sorted on the expression of NFKBIA integrating a guide (sgRNA) library targeting phenotype-associated variants genome-wide associated with blood pressure)

Summary

R2 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

guillaume-lettre:BP_screen_KRAB_R_R1_2_read2

md5sum

c28688eab4ad3d9737c47eb218c88aeb

Content MD5sum

bfcbcef94f6eaafeb338645d9c113098

File Size

1.1 GB

Submitted File Name

/home/lokensin/projects/rrg-glettre/sequencing_datastore/raw_data/CRISPR_IGVF_20230720/samples/NS.X0085.005.IndexR1_27.2BPR1_R_R2.fastq.gz

Checkfiles Version

Legacy version of checkfiles

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Sequencing Kit

NovaSeq 6000 SP Reagent Kit v1.5

Illumina Read Type

Average Read Length

151

Read Count

19514341

Samples

1 item

Accession

Type

Sample Terms

Summary

IGVFSM7144FDQS

InVitroSystem

TeloHAEC

TeloHAEC cell line, female, Homo sapiens (sorting details: FACS 60-80% expression of NFKBIA) modified with CRISPRi Sp-dCas9-KOX1-KRAB, transduced (lentivirus) with a guide library