IGVFFI3518DRNN

released
validated
1{
2    "@context": "/terms/",
3    "@id": "/sequence-files/IGVFFI3518DRNN/",
4    "@type": [
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6        "File",
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9    "accession": "IGVFFI3518DRNN",
10    "aliases": [
11        "buenrostro-bernstein:SS-LS_3884_barcode"
12    ],
13    "assay_titles": [
14        "SHARE-seq"
15    ],
16    "audit": {},
17    "award": {
18        "@id": "/awards/HG011986/",
19        "component": "mapping"
20    },
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23    "content_type": "reads",
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25    "creation_timestamp": "2025-03-25T02:14:30.746432+00:00",
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27    "file_format": "fastq",
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29        "@id": "/measurement-sets/IGVFDS4606LBDI/",
30        "@type": [
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33            "Item"
34        ],
35        "accession": "IGVFDS4606LBDI",
36        "assay_term": {
37            "@id": "/assay-terms/OBI_0002764/",
38            "term_name": "single-cell ATAC-seq"
39        },
40        "controlled_access": true,
41        "data_use_limitation_summaries": [
42            "GRU"
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44        "file_set_type": "experimental data",
45        "samples": [
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47                "@id": "/in-vitro-systems/IGVFSM3303ZLKL/",
48                "@type": [
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55                "classifications": [
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57                    "differentiated cell specimen"
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59                "sample_terms": [
60                    {
61                        "@id": "/sample-terms/EFO_0004905/",
62                        "status": "released",
63                        "term_name": "induced pluripotent stem cell"
64                    }
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66                "status": "released",
67                "summary": "Homo sapiens induced pluripotent stem pooled differentiated cell specimen induced to hepatic oval stem cell for 4 days (cellular sub pool: SS-PKR 177)",
68                "targeted_sample_term": {
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71                    "term_name": "hepatic oval stem cell"
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86    "lab": {
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88        "title": "Jason Buenrostro, Broad"
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91    "maximum_read_length": 99,
92    "md5sum": "b5a10316ce46ca7771d9ea1c459ff62d",
93    "mean_read_length": 99,
94    "minimum_read_length": 99,
95    "quality_metrics": [],
96    "read_count": 27883083,
97    "read_names": [
98        "Barcode index"
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100    "release_timestamp": "2025-04-22T04:10:59.546373+00:00",
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102    "schema_version": "15",
103    "seqspecs": [
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106    "sequencing_kit": "NovaSeq X Series 10B Reagent Kit",
107    "sequencing_platform": {
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109        "status": "released",
110        "term_name": "Illumina NovaSeq X"
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112    "sequencing_run": 3884,
113    "status": "released",
114    "submitted_by": {
115        "@id": "/users/c0838247-5022-46cf-a8fa-426e73bf4c94/",
116        "title": "Siddarth Wekhande"
117    },
118    "submitted_file_name": "gs://fc-bde04173-e601-40f3-84b5-6c7f0d9be441/submissions/final-outputs/07e69bd4-7fc9-44f3-915e-796979c95b5f/wf_create_fastq_barcode/942ff138-4b10-4504-9457-f224338408a5/call-create_fastq_barcode/shard-11/SS-CoPA-781_L4_SS-PKR-177_2022-APRIL-R1-PLATE2-2nd-THIRD_R2.barcode_file.fastq.gz",
119    "summary": "I1 reads from sequencing run 3884",
120    "upload_status": "validated",
121    "uuid": "b489051f-7e02-4f56-b7ed-ef136d670671"
122}