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INDEXED
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SequenceFile
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IGVFFI3509AKME
IGVFFI3509AKME
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This object is in preview status. Metadata is subject to change until this object is released.
File Set
IGVFDS8995MLTF
(single-nucleus RNA sequencing assay (10x multiome))
Summary
I2 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
igvf:corces_sequenceFile_RNA_RP004_G1_P054_L006_I2
md5sum
5e51c96a1c2b8e6c5643743f87964a6e
Content MD5sum
75f3d2e9fa8ae27c94045458a3dce622
File Size
356 MB
Submitted File Name
Multiome_RNA_RP004_G1_L001_P054_S28_L006_I2_001.fastq.gz
Checkfiles Version
v20
Attribution
Ryan Corces, Gladstone Institute UCSF
(
HG012076
—
Ansuman Satpathy
)
Sequencing Details
Sequencing Platform
Illumina NovaSeq X
Sequencing Run
1
Flowcell ID
223JJGLT3
Lane
6
Sequencing Kit
NovaSeq X Series 10B Reagent Kit
Illumina Read Type
I2
Average Read Length
10
Read Count
54179977
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM5141FLXJ
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
Alzheimer disease
,
cerebral amyloid angiopathy
,
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (male, 70 years) substantia nigra tissue associated with Alzheimer disease, Parkinson's disease; Homo sapiens (male, 70 years) posterior cingulate gyrus tissue associated with Parkinson's disease, mild cognitive impairment; ... and 10 more samples