IGVFFI3508PYOA

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS2670ZDTE(single-nucleus RNA sequencing assay (10x multiome))

Summary

R2 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_RNA_X016_G7_P016_L004_R2

md5sum

31fb7463f971fd2123c13369d96b04b1

Content MD5sum

28ac54c575f2966cea3c356e967814c7

File Size

13 GB

Submitted File Name

Multiome_RNA_X016_G7_L015_P016_S7_L004_R2_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HTHCCDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

257670723

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM4966DIHF

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 88 years) putamen tissue associated with Parkinson's disease, mild cognitive impairment; Homo sapiens (male, 79 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 10 more samples