IGVFFI3496FKLA

released
validated
1{
2    "@context": "/terms/",
3    "@id": "/sequence-files/IGVFFI3496FKLA/",
4    "@type": [
5        "SequenceFile",
6        "File",
7        "Item"
8    ],
9    "accession": "IGVFFI3496FKLA",
10    "aliases": [
11        "ansuman-satpathy:igvf_exp16_multi_10x2_NGS2_r2"
12    ],
13    "assay_titles": [
14        "10x multiome with MULTI-seq"
15    ],
16    "audit": {},
17    "award": {
18        "@id": "/awards/HG012076/",
19        "component": "mapping"
20    },
21    "checkfiles_version": "v14",
22    "content_md5sum": "50b9b69cd48455b851651c100c3c9c8f",
23    "content_type": "reads",
24    "controlled_access": true,
25    "creation_timestamp": "2025-02-03T23:04:47.225214+00:00",
26    "externally_hosted": false,
27    "file_format": "fastq",
28    "file_set": {
29        "@id": "/auxiliary-sets/IGVFDS3265EOGA/",
30        "@type": [
31            "AuxiliarySet",
32            "FileSet",
33            "Item"
34        ],
35        "accession": "IGVFDS3265EOGA",
36        "file_set_type": "lipid-conjugated oligo sequencing",
37        "samples": [
38            {
39                "@id": "/multiplexed-samples/IGVFSM9574RAZA/",
40                "@type": [
41                    "MultiplexedSample",
42                    "Sample",
43                    "Item"
44                ],
45                "accession": "IGVFSM9574RAZA",
46                "classifications": [
47                    "differentiated cell specimen",
48                    "multiplexed sample"
49                ],
50                "disease_terms": [],
51                "modifications": [],
52                "sample_terms": [
53                    {
54                        "@id": "/sample-terms/EFO_0004905/",
55                        "status": "released",
56                        "term_name": "induced pluripotent stem cell"
57                    }
58                ],
59                "status": "released",
60                "summary": "multiplexed sample: Homo sapiens (mixed sex) induced pluripotent stem differentiated cell specimen induced to islet of Langerhans for 11 days; Homo sapiens (mixed sex) induced pluripotent stem differentiated cell specimen induced to islet of Langerhans for 3 days; ... and 6 more samples",
61                "taxa": "Homo sapiens",
62                "treatments": []
63            }
64        ],
65        "status": "released",
66        "summary": "lipid-conjugated oligo sequencing for single-nucleus RNA sequencing assay (10x multiome with MULTI-seq), single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
67    },
68    "file_size": 362880785,
69    "flowcell_id": "22NCFCLT3",
70    "gene_list_for": [],
71    "href": "/sequence-files/IGVFFI3496FKLA/@@download/IGVFFI3496FKLA.fastq.gz",
72    "illumina_read_type": "R2",
73    "input_file_for": [
74        "/tabular-files/IGVFFI2466HQBG/"
75    ],
76    "integrated_in": [],
77    "lab": {
78        "@id": "/labs/ansuman-satpathy/",
79        "title": "Ansuman Satpathy, Stanford"
80    },
81    "lane": 4,
82    "loci_list_for": [],
83    "maximum_read_length": 90,
84    "md5sum": "8a65f4823a56152aa80d1e3a42f81b4e",
85    "mean_read_length": 90,
86    "minimum_read_length": 90,
87    "quality_metrics": [],
88    "read_count": 7447188,
89    "release_timestamp": "2025-03-22T00:40:58.422554+00:00",
90    "s3_uri": "s3://igvf-restricted-files/2025/02/03/d11a4ce3-e633-4b6a-9186-d2c1c5cb6286/IGVFFI3496FKLA.fastq.gz",
91    "schema_version": "15",
92    "seqspecs": [
93        "/configuration-files/IGVFFI6514ZQKF/"
94    ],
95    "sequencing_kit": "NovaSeq X Series 10B Reagent Kit",
96    "sequencing_platform": {
97        "@id": "/platform-terms/EFO_0022840/",
98        "status": "released",
99        "term_name": "Illumina NovaSeq X"
100    },
101    "sequencing_run": 1,
102    "status": "released",
103    "submitted_by": {
104        "@id": "/users/353655bc-31a1-4cd9-bac3-c7d34faf722f/",
105        "title": "Christopher Mcginnis"
106    },
107    "submitted_file_name": "/oak/stanford/groups/satpathy/users/backup/cmcg/igvf16/MULTI/CMAS18_MULTI2_S13_L004_R2_001.fastq.gz",
108    "summary": "R2 reads from sequencing run 1",
109    "upload_status": "validated",
110    "uuid": "d11a4ce3-e633-4b6a-9186-d2c1c5cb6286"
111}