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INDEXED
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IGVFFI3494LPTP
IGVFFI3494LPTP
released
validated
Json view
File Set
IGVFDS8103FALC
(single-nucleus ATAC-seq (10x multiome with MULTI-seq))
Summary
R3 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
ansuman-satpathy:igvf_exp12_atac_10x1_NGS3_r3
md5sum
e6650bc040637c123c3835766e4cb766
Content MD5sum
ebf33e7d2d04eb2da51ccd99864bb1d1
File Size
4.0 GB
Submitted File Name
/oak/stanford/projects/igvf/Projects/240425_IGVF12_McGinnis/ATAC/FASTQ/ATAC1_S5_L003_R3_001.fastq.gz
Checkfiles Version
Legacy version of checkfiles
Sequencing Details
Sequencing Platform
Illumina NovaSeq X
Sequencing Run
1
Flowcell ID
225JTGLT3
Lane
3
Sequencing Kit
NovaSeq X Series 10B Reagent Kit
Illumina Read Type
R3
Average Read Length
50
Read Count
130708539
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM3641EGVH
MultiplexedSample
B cell
,
bone marrow
multiplexed sample: Homo sapiens (female) B differentiated cell specimen induced to plasmablast for 6 days; Homo sapiens (female) B differentiated cell specimen induced to plasmablast for 5 days; ... and 10 more samples
Files Derived From This File
1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
IGVFFI7212WXZR
tsv
fragments
fragments
Ansuman Satpathy, Stanford
4.3 GB
validation exempted
Associated seqspec Files
1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
IGVFFI6152BDFZ
yaml
seqspec
seqspec of IGVFFI0863GHNX, IGVFFI6543MNBG, IGVFFI3494LPTP, IGVFFI9211ZNLQ
Ansuman Satpathy, Stanford
1.4 KB
validated
Attribution
Award
HG012076
Principal Investigator(s)
Ansuman Satpathy
Contact P.I.
Ansuman Satpathy
Lab
Ansuman Satpathy, Stanford