IGVFFI3493YDEV

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS6783ZBOV(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP009_G8_P057_L001_R1

md5sum

d8e6887a8372fca2aa0b72dbe1ff860b

Content MD5sum

9e908f03430033a513080357408b5803

File Size

1.4 GB

Submitted File Name

Multiome_ATAC_RP009_G8_L008_P057_S16_L001_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223HGTLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

44019810

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM9488DNCQ

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, multiple sclerosis, Parkinson's disease

multiplexed sample: Homo sapiens (female, 70 years) middle temporal gyrus tissue associated with Parkinson's disease; Homo sapiens (male, 75 years) cerebellar cortex tissue associated with Parkinson's disease, cerebral amyloid angiopathy; ... and 10 more samples