IGVFFI3489ZVRU

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS7629BTQC(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP024_G4_P067_L001_R1

md5sum

9c56c2ace893fc8f74e391db294b6160

Content MD5sum

e2d40c1847bfef1d5090c7144800df01

File Size

2.1 GB

Submitted File Name

Multiome_ATAC_RP024_G4_L004_P067_S20_L001_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223HC3LT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

66354521

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM4734YTAT

MultiplexedSample

middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 84 years) posterior cingulate gyrus tissue associated with Parkinson's disease, mild cognitive impairment; Homo sapiens (female, 84 years) substantia nigra tissue associated with Parkinson's disease; ... and 10 more samples