IGVFFI3489GQGW

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS0856IUPF(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP011_G6_P059_L006_R1

md5sum

bb07b06304b1f919383da4d208431356

Content MD5sum

d1d539f982815e972f7edfbdbd6c860a

File Size

1.6 GB

Submitted File Name

Multiome_ATAC_RP011_G6_L006_P059_S78_L006_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

225CCCLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

52201682

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM6926MVZN

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 53 years) middle temporal gyrus tissue; Homo sapiens (male, 75 years) substantia nigra tissue associated with Parkinson's disease, cerebral amyloid angiopathy; ... and 14 more samples