IGVFFI3484CDVT

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS0986EJTQ(single-nucleus ATAC-seq (10x multiome))

Summary

R3 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP025_G5_P069_L003_R3

md5sum

c78a4c8c6ad011182c3627ddcadcdb7e

Content MD5sum

b7bdcc69f90fee572ff5e8e92488a9bc

File Size

18 GB

Submitted File Name

Multiome_ATAC_RP025_G5_L005_P069_S5_L003_R3_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

19RTCA4LE

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

150

Read Count

272444758

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM4968PVUL

MultiplexedSample

posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, Parkinson's disease

multiplexed sample: Homo sapiens (male, 79 years) posterior cingulate gyrus tissue; Homo sapiens (male, 81 years) putamen tissue; ... and 8 more samples