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INDEXED
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IGVFFI3472WGIO
IGVFFI3472WGIO
released
validated
Json view
File Set
IGVFDS3634TPOY
(single-nucleus RNA sequencing assay (10x multiome with MULTI-seq))
Summary
I2 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
ansuman-satpathy:igvf_exp9_rna_10x1_NGS2_i2
md5sum
294d4d02a3e348309efa15fb0b36ef79
Content MD5sum
24fb70b919690dcda35c161e44e699a3
File Size
2.0 GB
Submitted File Name
/oak/stanford/projects/igvf/Projects/230707_IGVF9_McGinnis/GEX/FASTQ/GEX_1_CMAS_IGVF9_R_S7_L002_I2_001.fastq.gz
Checkfiles Version
Legacy version of checkfiles
Sequencing Details
Sequencing Platform
Illumina NovaSeq X
Sequencing Run
1
Flowcell ID
223JHYLT3
Lane
2
Sequencing Kit
NovaSeq X Series 10B Reagent Kit
Illumina Read Type
I2
Average Read Length
10
Read Count
396315824
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM9678IFHW
MultiplexedSample
B cell
multiplexed sample: Homo sapiens (male) B differentiated cell specimen induced to plasmablast for 1 day; Homo sapiens (male) B differentiated cell specimen induced to plasmablast for 5 days; ... and 5 more samples
Files Derived From This File
1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
IGVFFI6188HAUP
hdf5
raw feature barcode matrix
cell by gene in raw feature barcode matrix
Ansuman Satpathy, Stanford
220 MB
validated
Associated seqspec Files
1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
IGVFFI6838ZGFZ
yaml
seqspec
seqspec of IGVFFI2797UCDW, IGVFFI1038LZVL, IGVFFI3472WGIO, IGVFFI3025RYMZ
Ansuman Satpathy, Stanford
1.4 KB
validated
Attribution
Award
HG012076
Principal Investigator(s)
Ansuman Satpathy
Contact P.I.
Ansuman Satpathy
Lab
Ansuman Satpathy, Stanford