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IGVFFI3463BDEE

released
validated
File Set
IGVFDS5294UXUI(CRISPR base editing FlowFISH screen sorted on the expression of NFKBIA integrating a guide (sgRNA) library targeting phenotype-associated variants genome-wide associated with blood pressure)
Summary
R2 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
guillaume-lettre:BP_screen_ABE8_FR_R3_2_read2
md5sum
05223f566faeac6e8a8eec683845dc07
Content MD5sum
86dd24e3cda75aa4c31e44e8b40a3d33
File Size
1.1 GB
Submitted File Name
/home/lokensin/projects/rrg-glettre/sequencing_datastore/raw_data/BE_IGVF_20230720/samples/NS.X0070.001.IndexR1_48.FR_R3_2_R2.fastq.gz
Checkfiles Version
Legacy version of checkfiles
Attribution
Guillaume Lettre, MHI

Sequencing Details

Sequencing Platform
Illumina NovaSeq 6000
Sequencing Run
1
Sequencing Kit
NovaSeq 6000 SP Reagent Kit v1.5
Illumina Read Type
R2
Average Read Length
151
Read Count
19566443

Samples

1 item
Accession
Type
Sample Terms
Summary
InVitroSystem
Homo sapiens (female) TeloHAEC cell line (sorting details: FACS 80-100% expression of NFKBIA) modified with CRISPR base editing SpRY-ABE8e, transduced (lentivirus) with a guide library

Files Derived From This File

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
csv
guide quantifications
guide quantifications
Guillaume Lettre, MHI
425 KB
validated