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IGVFFI3461WBDK
IGVFFI3461WBDK
released
validated
Json view
File Set
IGVFDS8403DDLC
(mixed CRISPR TAP-seq integrating a guide (sgRNA) library targeting accessible genome regions in 29 genomic loci)
Summary
R1 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
jesse-engreitz:measurement_files_CRUDO_TAPseq-Auxin6hrs-Rep2_S4_R1
md5sum
266169b724f34ba25d6f820b495ee117
Content MD5sum
74e33e8333ffd0e0afe68b006f4be2e8
File Size
411 MB
Submitted File Name
/oak/stanford/groups/engreitz/Projects/Cohesin/221224_Cohesin_TAPseq_v2/221219_P044_cohesin_tapseq_v2/outs/fastq_path/L380_S3_L004_R1_001.fastq.gz
Sequencing Details
Sequencing Platform
Illumina NextSeq 550
Sequencing Run
1
Lane
4
Illumina Read Type
R1
Average Read Length
28
Read Count
17289700
Samples
1 item
Accession
Type
Sample Terms
Summary
IGVFSM8511JOMW
InVitroSystem
HCT116
HCT116 cell line, male, Homo sapiens treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours, modified with AID system targeting RAD21, CRISPRi Sp-dCas9-KOX1-KRAB, transfected with a guide library
Associated seqspec Files
1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
IGVFFI2982KSVM
yaml
seqspec
seqspec of IGVFFI3461WBDK, IGVFFI9043ACMD, IGVFFI4839QVTC
Jesse Engreitz, Stanford
1.0 KB
validated
Attribution
Award
HG011972
Principal Investigator(s)
Anshul Kundaje
,
Jesse Engreitz
,
Marlene Rabinovitch
,
Lars Steinmetz
,
Michael Bassik
,
Thomas Quertermous
,
Will Greenleaf
Contact P.I.
Jesse Engreitz
Lab
Jesse Engreitz, Stanford