IGVFFI3449QEQS

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS9523LMAM(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP005_G3_P053_L003_R1

md5sum

e81b3dd39ce8a18fc5bf8ee5e8956ab2

Content MD5sum

15f9f39c6e6eb30898ef697d53249cf2

File Size

1.7 GB

Submitted File Name

Multiome_ATAC_RP005_G3_L003_P053_S19_L003_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223JL2LT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

54471724

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM0891NGTB

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 72 years) posterior cingulate gyrus tissue associated with Parkinson's disease; Homo sapiens (female, 81 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 10 more samples