IGVFFI3449HNWF

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS3677FWQE(single-nucleus ATAC-seq (10x multiome))

Summary

R2 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X052_G6_P071_L007_R2

md5sum

df5e2b8a060388141bce4852a247a2ce

Content MD5sum

7c091826e7098f1499a13b62680574cd

File Size

3.4 GB

Submitted File Name

Multiome_ATAC_X052_G6_L006_P071_S42_L007_R2_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

19RTCA4LE

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

196285779

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM0335XJKH

MultiplexedSample

middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 78 years) posterior cingulate gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (male, 70 years) middle temporal gyrus tissue associated with Alzheimer disease, Parkinson's disease; ... and 8 more samples