IGVFFI3448XIOT

{
    "@context": "/terms/",
    "@id": "/sequence-files/IGVFFI3448XIOT/",
    "@type": [
        "SequenceFile",
        "File",
        "Item"
    ],
    "accession": "IGVFFI3448XIOT",
    "assay_titles": [
        "Parse SPLiT-seq"
    ],
    "audit": {},
    "award": {
        "@id": "/awards/HG012077/",
        "component": "mapping"
    },
    "content_md5sum": "783030d213fcbd233800e56a4e65e06c",
    "content_type": "reads",
    "controlled_access": false,
    "creation_timestamp": "2024-04-30T22:31:31.222794+00:00",
    "derived_from": [
        "/sequence-files/IGVFFI6580APRO/"
    ],
    "externally_hosted": false,
    "file_format": "fastq",
    "file_set": {
        "@id": "/measurement-sets/IGVFDS9445YYVB/",
        "accession": "IGVFDS9445YYVB",
        "file_set_type": "experimental data",
        "samples": [
            {
                "@id": "/multiplexed-samples/IGVFSM2294BOOU/",
                "accession": "IGVFSM2294BOOU",
                "classifications": [
                    "multiplexed sample"
                ],
                "disease_terms": [],
                "modifications": [],
                "sample_terms": [
                    {
                        "@id": "/sample-terms/NTR_0000646/",
                        "status": "released",
                        "term_name": "left cerebral cortex"
                    }
                ],
                "status": "released",
                "summary": "multiplexed sample: left cerebral cortex tissue, female, Mus musculus CASTJ (72 days); left cerebral cortex tissue, male, Mus musculus B6J (72 days); ... and 6 more samples",
                "taxa": "Mus musculus",
                "treatments": []
            }
        ],
        "status": "released",
        "summary": "Parse SPLiT-seq"
    },
    "file_size": 5368004011,
    "gene_list_for": [],
    "href": "/sequence-files/IGVFFI3448XIOT/@@download/IGVFFI3448XIOT.fastq.gz",
    "input_file_for": [
        "/tabular-files/IGVFFI9644KUXI/",
        "/tabular-files/IGVFFI2461OHLX/"
    ],
    "integrated_in": [],
    "lab": {
        "@id": "/labs/ali-mortazavi/",
        "title": "Ali Mortazavi, UCI"
    },
    "loci_list_for": [],
    "maximum_read_length": 68558,
    "md5sum": "54288dc4c4778f27661ab5a915d7f451",
    "mean_read_length": 815,
    "minimum_read_length": 20,
    "read_count": 7285200,
    "release_timestamp": "2024-05-08T23:38:44.634207+00:00",
    "s3_uri": "s3://igvf-files/2024/04/30/5571c675-1206-4ae8-9e1a-54853befd4e3/IGVFFI3448XIOT.fastq.gz",
    "schema_version": "14",
    "seqspecs": [],
    "sequencing_kit": "ONT Ligation Sequencing Kit V14",
    "sequencing_platform": {
        "@id": "/platform-terms/EFO_0008633/",
        "status": "released",
        "term_name": "ONT GridION X5"
    },
    "sequencing_run": 2,
    "status": "released",
    "submitted_by": {
        "@id": "/users/ebd1025b-e3ab-4e51-bfcd-1415f278281a/",
        "title": "Diane Trout"
    },
    "submitted_file_name": "igvf_b01/nanopore/igvfb01_13H_lig-ss_2.fastq.gz",
    "summary": "reads from sequencing run 2",
    "upload_status": "validated",
    "uuid": "5571c675-1206-4ae8-9e1a-54853befd4e3"
}