IGVFFI3434THGW

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS6432VUIF(single-nucleus RNA sequencing assay (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_RNA_X016_G8_P016_L004_I1

md5sum

c1e5940274bcb83a797807de822f2723

Content MD5sum

85ffbf44be019c899c22f862de379264

File Size

1.6 GB

Submitted File Name

Multiome_RNA_X016_G8_L016_P016_S8_L004_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HTHCCDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

268977674

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM7655LNJB

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 88 years) putamen tissue associated with Parkinson's disease, mild cognitive impairment; Homo sapiens (male, 79 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 10 more samples