IGVFFI3434OSIO

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS1728ZLAX(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP001_G5_P051_L005_R1

md5sum

9f93003ee39abf6d97bc1b3d6568846f

Content MD5sum

9e663c0558e95764afee8908b28abe13

File Size

2.6 GB

Submitted File Name

Multiome_ATAC_RP001_G5_L005_P051_S25_L005_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223JL2LT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

86026064

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM7076WLCU

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 79 years) posterior cingulate gyrus tissue; Homo sapiens (male, 81 years) putamen tissue; ... and 10 more samples