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INDEXED
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SequenceFile
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IGVFFI3434AHJW
IGVFFI3434AHJW
released
validated
Json view
File Set
IGVFDS2231YIUR
(single-nucleus ATAC-seq (10x multiome))
Summary
R2 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
chongyuan-luo:ys3e_snATAC_L3_R2
md5sum
67a09fe55efcebe8f351916bb48e559c
Content MD5sum
3b359afd8ded546aa4ad32505910d678
File Size
5.0 GB
Submitted File Name
/home/ec2-user/igvf/submit/fastq/year2/multiome/atac/IGVF2ATAC_E_S5_L003_R2_001.fastq.gz
Checkfiles Version
v14
Attribution
Kathrin Plath, UCLA
(
HG012079
—
Chongyuan Luo
)
Sequencing Details
Sequencing Platform
Illumina NovaSeq 6000
Sequencing Run
1
Lane
3
Sequencing Kit
NovaSeq 6000 S4 Reagent Kit v1.5
Illumina Read Type
R2
Average Read Length
24
Read Count
300329517
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM2167MERL
MultiplexedSample
fibroblast
multiplexed sample: Homo sapiens fibroblast reprogrammed cell specimen induced to induced pluripotent stem cell for 1 day; Homo sapiens fibroblast reprogrammed cell specimen induced to induced pluripotent stem cell for 5 days; ... and 2 more samples
Associated seqspec Files
1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
IGVFFI3400UXVN
yaml
seqspec
seqspec of IGVFFI0202DLYT, IGVFFI7843MNNG, IGVFFI3434AHJW, IGVFFI7916QZSQ
Kathrin Plath, UCLA
1.3 KB
validated