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IGVFFI3433BRWC

released
validated
File Set
IGVFDS7161RJGI(single-nucleus ATAC-seq (10x multiome with MULTI-seq))
Summary
R2 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
ansuman-satpathy:igvf_exp12_atac_10x6_NGS5_r2
md5sum
33ac6207f8dd1aae3c4e11aa84b7f775
Content MD5sum
5e5d1656d88cbe32d16fa85f2d5c7c32
File Size
3.3 GB
Submitted File Name
/oak/stanford/projects/igvf/Projects/240425_IGVF12_McGinnis/ATAC/FASTQ/ATAC6_S10_L007_R2_001.fastq.gz
Checkfiles Version
Legacy version of checkfiles

Sequencing Details

Sequencing Platform
Illumina NovaSeq X
Sequencing Run
1
Flowcell ID
225JTGLT3
Lane
5
Sequencing Kit
NovaSeq X Series 10B Reagent Kit
Illumina Read Type
R2
Average Read Length
24
Read Count
203050489

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (female) B differentiated cell specimen induced to plasmablast for 6 days; Homo sapiens (female) B differentiated cell specimen induced to plasmablast for 5 days; ... and 10 more samples

Files Derived From This File

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
tsv
fragments
fragments
Ansuman Satpathy, Stanford
6.8 GB
validation exempted

Associated seqspec Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
yaml
seqspec
seqspec of IGVFFI8991HSQL, IGVFFI3433BRWC, IGVFFI9899URWE, IGVFFI1521PFNR
Ansuman Satpathy, Stanford
1.4 KB
validated

Attribution

Award
HG012076
Principal Investigator(s)
Contact P.I.
Ansuman Satpathy
Lab
Ansuman Satpathy, Stanford