IGVFFI3421ZHMP

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS4050XKFP(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X026_G4_P025_L001_R1

md5sum

f459888f91f1c04e436c06aa09717552

Content MD5sum

7289f499a75be6760b5a481bb0810ba7

File Size

4.7 GB

Submitted File Name

Multiome_ATAC_X026_G4_L004_P025_S5_L001_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HV737DSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

150338535

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM8033EKDR

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 69 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (female, 78 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 10 more samples