IGVFFI3418KUKA

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS4641AQKE(single-nucleus RNA sequencing assay (10x multiome))

Summary

R1 reads from sequencing run 2

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_RNA_X053_G2_P072_L002_R1

md5sum

3ba394e126de2f2aa1a7d27f17fe75b7

Content MD5sum

c60ea10f8308f18ce627d853bb956748

File Size

13 GB

Submitted File Name

Multiome_RNA_X053_G2_L002_P072_S6_L002_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

19UBCA4LE

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

151

Read Count

147597813

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM6916RHHD

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 83 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (male, 73 years) middle temporal gyrus tissue; ... and 8 more samples