IGVFFI3407XNHP

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS5880FLUF(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X014_G6_P013_L001_R1

md5sum

431ee6e0fa52a0c6ced8de110e868a22

Content MD5sum

69ce25993b091960a787b77a8d698954

File Size

5.9 GB

Submitted File Name

Multiome_ATAC_X014_G6_L006_P013_S4_L001_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HTHCCDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

183500882

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM9366LKIJ

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, multiple sclerosis, Parkinson's disease

multiplexed sample: Homo sapiens (male, 89 years) cerebellar cortex tissue; Homo sapiens (male, 80 years) putamen tissue associated with Parkinson's disease; ... and 10 more samples