IGVFFI3406MDVI

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS6304DGLQ(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X049_G2_P065_L008_R1

md5sum

8a77f82a3b4d579057381ce9c80771c1

Content MD5sum

643bbe939621940c1b221128fd24f1bb

File Size

1.6 GB

Submitted File Name

Multiome_ATAC_X049_G2_L002_P065_S24_L008_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223HC3LT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

53004915

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM2711AYDL

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, Parkinson's disease

multiplexed sample: Homo sapiens (male, 63 years) cerebellar cortex tissue associated with Parkinson's disease; Homo sapiens (female, 86 years) substantia nigra tissue associated with Parkinson's disease; ... and 8 more samples