{
"@context": "/terms/",
"@id": "/sequence-files/IGVFFI3397RQUC/",
"@type": [
"SequenceFile",
"File",
"Item"
],
"accession": "IGVFFI3397RQUC",
"aliases": [
"ali-mortazavi:igvfB01_13G-gc_lig-ss_11.pod5"
],
"assay_titles": [
"Parse SPLiT-seq"
],
"audit": {},
"award": {
"@id": "/awards/HG012077/",
"component": "mapping"
},
"content_type": "Nanopore reads",
"controlled_access": false,
"creation_timestamp": "2024-04-30T16:55:40.126406+00:00",
"externally_hosted": false,
"file_format": "pod5",
"file_set": {
"@id": "/measurement-sets/IGVFDS4803WKTQ/",
"accession": "IGVFDS4803WKTQ",
"file_set_type": "experimental data",
"samples": [
{
"@id": "/multiplexed-samples/IGVFSM8722YQAW/",
"accession": "IGVFSM8722YQAW",
"classifications": [
"multiplexed sample"
],
"disease_terms": [],
"modifications": [],
"sample_terms": [
{
"@id": "/sample-terms/NTR_0000646/",
"status": "released",
"term_name": "left cerebral cortex"
}
],
"status": "released",
"summary": "multiplexed sample: left cerebral cortex tissue, female, Mus musculus CASTJ (72 days); left cerebral cortex tissue, male, Mus musculus B6J (72 days); ... and 6 more samples",
"taxa": "Mus musculus",
"treatments": []
}
],
"status": "released",
"summary": "Parse SPLiT-seq"
},
"file_size": 1141803266280,
"flowcell_id": "PAO05399",
"gene_list_for": [],
"href": "/sequence-files/IGVFFI3397RQUC/@@download/IGVFFI3397RQUC.pod5",
"input_file_for": [
"/sequence-files/IGVFFI2224QAWI/"
],
"integrated_in": [],
"lab": {
"@id": "/labs/ali-mortazavi/",
"title": "Ali Mortazavi, UCI"
},
"loci_list_for": [],
"md5sum": "7c8c8a63a52f1dacf0e93cac94ac5c0f",
"release_timestamp": "2024-05-08T23:38:43.197925+00:00",
"s3_uri": "s3://igvf-files/2024/04/30/c6bec196-fe41-4d46-977b-1f31a8a72edf/IGVFFI3397RQUC.pod5",
"schema_version": "14",
"seqspecs": [],
"sequencing_kit": "ONT Ligation Sequencing Kit V14",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0700019/",
"status": "released",
"term_name": "ONT PromethION 2 Solo"
},
"sequencing_run": 1,
"status": "released",
"submitted_by": {
"@id": "/users/ebd1025b-e3ab-4e51-bfcd-1415f278281a/",
"title": "Diane Trout"
},
"submitted_file_name": "igvf_b01/nanopore_p2/igvfb01_13G-gc_lig-ss_11.pod5",
"summary": "Nanopore reads from sequencing run 1",
"upload_status": "validated",
"uuid": "c6bec196-fe41-4d46-977b-1f31a8a72edf"
}