IGVFFI3391IDNL

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS3466SAJY(single-nucleus ATAC-seq (10x multiome))

Summary

R2 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X056_G2_P073_L002_R2

md5sum

c58feaa6dec635bd3c2c14b4c70b39fa

Content MD5sum

4fa1510adf91eddc06548a5e9a8fc052

File Size

2.7 GB

Submitted File Name

Multiome_ATAC_X056_G2_L002_P073_S10_L002_R2_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

19NHCA4LE

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

156171394

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM1116BOZN

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 80 years) posterior cingulate gyrus tissue associated with Parkinson's disease; Homo sapiens (female, 79 years) cerebellar cortex tissue associated with Parkinson's disease, cerebral amyloid angiopathy; ... and 8 more samples