IGVFFI3388XQAN

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS8426LZVO(single-nucleus ATAC-seq (10x multiome))

Summary

R2 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP004_G1_P053_L003_R2

md5sum

829aad3c6918de9b1be3af6c83526f1c

Content MD5sum

fa5b4e310e293ea5c6ae1f262701806c

File Size

1.1 GB

Submitted File Name

Multiome_ATAC_RP004_G1_L001_P053_S9_L003_R2_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223JL2LT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

63046759

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM5141FLXJ

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 70 years) substantia nigra tissue associated with Alzheimer disease, Parkinson's disease; Homo sapiens (male, 70 years) posterior cingulate gyrus tissue associated with Parkinson's disease, mild cognitive impairment; ... and 10 more samples