IGVFFI3377HPBK

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS6021VABQ(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP023_G1_P067_L002_R1

md5sum

d79154a3f05f7bf29338620e7bde05ba

Content MD5sum

25c0ac684f24974f5860e3949cac2f09

File Size

1.7 GB

Submitted File Name

Multiome_ATAC_RP023_G1_L001_P067_S13_L002_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223HC3LT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

54770895

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM3608VEWP

MultiplexedSample

middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 52 years) posterior cingulate gyrus tissue; Homo sapiens (male, 87 years) putamen tissue associated with Parkinson's disease, cerebral amyloid angiopathy; ... and 10 more samples