IGVFFI3372MPLZ

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS6182VLTG(single-nucleus ATAC-seq (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP001_G1_P051_L008_I1

md5sum

0e589b7609d8eeea2365b5e2135774a3

Content MD5sum

60be5f80892fe406d4322daa6bde4ba7

File Size

454 MB

Submitted File Name

Multiome_ATAC_RP001_G1_L001_P051_S21_L008_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223JL2LT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

65298122

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM7927MDCD

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 79 years) posterior cingulate gyrus tissue; Homo sapiens (male, 81 years) putamen tissue; ... and 10 more samples