IGVFFI3364QZVW

released

validated

File Set

IGVFDS3139RYUI(gRNA sequencing for mixed CRISPR FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci)

Summary

reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

jesse-engreitz:auxiliary_file_CRUDO_MYC-Auxin0hrs-FF2-BinC-PCR4_Rep1_S45

md5sum

05d3c9bfec2d66392e8b90a1010a91b9

Content MD5sum

164b4d8ebb8c89498be28f9c46b44db9

File Size

39 MB

Submitted File Name

/oak/stanford/groups/engreitz/Projects/Cohesin/220819B015_MYC/fastq_trim/MYC-Auxin0hrs-FF2-BinC-PCR4-Rep1_S45_R1_001.fastq.gz

Sequencing Details

Sequencing Platform

Illumina HiSeq 2500

Sequencing Run

Index

TCTCGGTC:TGCG

Average Read Length

Read Count

1981298

Samples

1 item

Accession

Type

Sample Terms

Summary

IGVFSM7258NLNH

InVitroSystem

HCT116

HCT116 cell line, male, Homo sapiens (sorting details: FACS bin C for 35-45% expression of MYC) modified with CRISPRi Sp-dCas9-KOX1-KRAB, inactive AID system targeting RAD21, transfected with a guide library