IGVFFI3364JMMG

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS2373GWYA(single-nucleus ATAC-seq (10x multiome))

Summary

R2 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP013_G1_P061_L004_R2

md5sum

ff6a508d1a830a3186766719a49530fc

Content MD5sum

2c66d568a106862db1eab6e004bce56b

File Size

1.1 GB

Submitted File Name

Multiome_ATAC_RP013_G1_L001_P061_S1_L004_R2_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

2257VGLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

59918743

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM3819ZCMN

MultiplexedSample

middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, multiple sclerosis, Parkinson's disease

multiplexed sample: Homo sapiens (female, 86 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (male, 78 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 14 more samples