IGVFFI3361DROD

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS5084VXAN(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X047_G5_P049_L001_R1

md5sum

6e70e73ef1a913bac10002ad5ee86c87

Content MD5sum

0c12c19e9e9c595d7dc6bd1be0c6eb4b

File Size

8.0 GB

Submitted File Name

Multiome_ATAC_X047_G5_L005_P049_S1_L001_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

H7VW3DSX7

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

243864943

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM1695CPQZ

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 78 years) putamen tissue associated with Parkinson's disease, mild cognitive impairment; Homo sapiens (male, 73 years) posterior cingulate gyrus tissue associated with Parkinson's disease, mild cognitive impairment; ... and 10 more samples