IGVFFI3360ASZI

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS9259SQOO(single-nucleus ATAC-seq (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP008_G2_P057_L003_I1

md5sum

895651617d50bc03230146783dbf5d27

Content MD5sum

b40108c5a4e52a7e56ac96cbb97313f4

File Size

285 MB

Submitted File Name

Multiome_ATAC_RP008_G2_L002_P057_S2_L003_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223HGTLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

37242432

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM5834KBZJ

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, multiple sclerosis, Parkinson's disease

multiplexed sample: Homo sapiens (male, 69 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (male, 79 years) substantia nigra tissue associated with Parkinson's disease; ... and 10 more samples