IGVFFI3357UXOO

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS7588UXOK(single-nucleus RNA sequencing assay (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_RNA_X053_G7_P072_L008_R1

md5sum

b02011c2fdf51e99f5b73271995c8293

Content MD5sum

229e62056423e783dfd68a00c0ea7635

File Size

14 GB

Submitted File Name

Multiome_RNA_X053_G7_L007_P072_S71_L008_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

19RTCA4LE

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

151

Read Count

154544311

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM2635PZMY

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 83 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (male, 73 years) middle temporal gyrus tissue; ... and 8 more samples