IGVFFI3356SPIZ

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS7235JXKZ(single-nucleus RNA sequencing assay (10x multiome))

Summary

I2 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_RNA_RP012_G3_P060_L008_I2

md5sum

057fc96c40d7af2d20a5e9df842d2ac6

Content MD5sum

3c9b5c79d6acad9e24d88bb2eae1b932

File Size

325 MB

Submitted File Name

Multiome_RNA_RP012_G3_L003_P060_S35_L008_I2_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223HCCLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

56901926

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM9610QWFB

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 79 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (male, 89 years) substantia nigra tissue; ... and 14 more samples