IGVFFI3341EDDY

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS5235WVGK(single-nucleus ATAC-seq (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP004_G8_P053_L004_I1

md5sum

9cc7f51cd120b19188d1d866a435facb

Content MD5sum

160a75b6d153d11f7cfef72a5b5f0d03

File Size

595 MB

Submitted File Name

Multiome_ATAC_RP004_G8_L008_P053_S16_L004_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223JL2LT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

82877877

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM3933PDRB

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 70 years) substantia nigra tissue associated with Alzheimer disease, Parkinson's disease; Homo sapiens (male, 70 years) posterior cingulate gyrus tissue associated with Parkinson's disease, mild cognitive impairment; ... and 10 more samples