Home

IGVFFI3341ASXS

preview
validated
This object is in preview status. Metadata is subject to change until this object is released.
File Set
IGVFDS4094QWKO(CRISPR prime editing Variant-EFFECTS integrating a guide (sgRNA) library targeting sequence variants in a genomic locus)
Summary
R1 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
jesse-engreitz:240908-S029-PPIF_5SpliceSite-IndividualVariantExp-AGGT_CAAC-THP1-BioRep1-FFrep2-BinA-PCRrep2_R1
md5sum
54ab68d0613f0c1847787f8b42a90de2
Content MD5sum
fc90252caac777bd304789a0d67368f7
File Size
3.1 MB
Submitted File Name
240908-S029-5splice-THP1-5splicesite_C11-Amp_PPIF_5splicesite-BioRep1-FFrep2-BinA-PCRrep2_S839_R1_001.fastq.gz

Sequencing Details

Sequencing Platform
Illumina NovaSeq X
Sequencing Run
1
Illumina Read Type
R1
Index
CTATGCGT:CGCAGACG
Average Read Length
151
Read Count
110076

Samples

1 item
Accession
Type
Sample Terms
Summary
InVitroSystem
THP-1 cell line, male, Homo sapiens (sorting details: FACS bin for 0-25% expression of PPIF) modified with CRISPR prime editing Sp-nCas9-M-MLV RT (PE2), transfected with a guide library

Attribution

Award
HG011972
Principal Investigator(s)
Contact P.I.
Jesse Engreitz
Lab
Jesse Engreitz, Stanford