IGVFFI3338ZXPE

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS8913NULI(single-nucleus RNA sequencing assay (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_RNA_X041_G2_P042_L004_R1

md5sum

081833b0d77ef1c3a0996b2699e7cdbf

Content MD5sum

51371046d5c01e474f52868fd145a601

File Size

1.6 GB

Submitted File Name

Multiome_RNA_X041_G2_L002_P042_S12_L004_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

222YMLLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

80733026

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM6363AZVN

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, multiple sclerosis, Parkinson's disease

multiplexed sample: Homo sapiens (male, 72 years) middle temporal gyrus tissue associated with cerebral amyloid angiopathy; Homo sapiens (female, 82 years) substantia nigra tissue associated with Alzheimer disease, Parkinson's disease, cerebral amyloid angiopathy, multiple sclerosis; ... and 10 more samples