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IGVFFI3335XFSL

released
validated
File Set
IGVFDS6721DTCZ(single-cell RNA sequencing assay (SHARE-seq))
Summary
R2 reads from sequencing run 257
File Format
fastq
Content Type
reads
Aliases
bradley-bernstein:SS-LS_2070_R2
bradley-bernstein:SS-LS_257_R2
buenrostro-bernstein:SS-LS_2070_R2
buenrostro-bernstein:SS-LS_257_R2
md5sum
c373c10eed391fd9b5bf1570c0651971
Content MD5sum
7c5659d1d1d19c8440ce13a06bb8533e
File Size
2.6 GB
Submitted File Name
gs://broad-epi-ss-lane-subsets/SS-CoPA-199_L1_SS-PKR-132_2022-APRIL-R1-PLATE2-ENTIRE-PLATE_R2.fastq.gz
Checkfiles Version
Legacy version of checkfiles
Attribution
Jason Buenrostro, Broad

Sequencing Details

Sequencing Platform
Illumina NovaSeq 6000
Sequencing Run
257
Sequencing Kit
NovaSeq 6000 S4 Reagent Kit v1.5
Illumina Read Type
R2
Average Read Length
149
Read Count
52944847

Samples

1 item
Accession
Type
Sample Terms
Summary
Tissue
Mus musculus C57BL/6 (female) brain tissue (cellular sub pool: SS-PKR 132)

Files Derived From This File

2 items
tar
comprehensive gene count matrix
unfiltered cell by gene in comprehensive gene count matrix
Jason Buenrostro, Broad
5.2 GB
validated
h5ad
sparse gene count matrix
unfiltered cell by gene in sparse gene count matrix
Jason Buenrostro, Broad
962 MB
validated

Associated seqspec Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
yaml
seqspec
seqspec of IGVFFI3892BRSH, IGVFFI3335XFSL
Jason Buenrostro, Broad
1.2 KB
validated