IGVFFI3331BRJW

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS3199TQBM(single-nucleus ATAC-seq (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X020_G5_P019_L003_I1

md5sum

7e634a104070941184619a7bf7d67d5f

Content MD5sum

8d5ff68e3b76eefbdb2d58948aa99566

File Size

1.8 GB

Submitted File Name

Multiome_ATAC_X020_G5_L005_P019_S37_L003_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HV7NNDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

266760951

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM2684WPNY

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 81 years) substantia nigra tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (female, 84 years) substantia nigra tissue associated with Parkinson's disease, mild cognitive impairment; ... and 10 more samples