IGVFFI3323BFCH

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS9871NUDC(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP021_G6_P067_L004_R1

md5sum

4a8919a4efb73bec160897ab0a6d80dc

Content MD5sum

6b8bd91ea2d19e782e915bb0e7dd62d0

File Size

2.5 GB

Submitted File Name

Multiome_ATAC_RP021_G6_L006_P067_S4_L004_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223HC3LT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

79195267

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM0125OEIT

MultiplexedSample

middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 88 years) putamen tissue associated with Parkinson's disease, mild cognitive impairment; Homo sapiens (male, 80 years) substantia nigra tissue associated with Parkinson's disease; ... and 14 more samples