IGVFFI3317EIQU

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS1524WKTN(single-nucleus ATAC-seq (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X028_G3_P027_L003_I1

md5sum

4f18c6ec7d7c2672dc38a058581428ad

Content MD5sum

a6c82109fafbec0ac5d2fd23de17137b

File Size

1.4 GB

Submitted File Name

Multiome_ATAC_X028_G3_L003_P027_S20_L003_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HV737DSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

195525738

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM7150ADFP

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 79 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (female, 82 years) middle temporal gyrus tissue associated with cerebral amyloid angiopathy; ... and 10 more samples