IGVFFI3307SWAW

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS9558NTBE(single-nucleus ATAC-seq (10x multiome))

Summary

R3 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X050_G6_P065_L005_R3

md5sum

a84e4fa728c006e05c0eb70f98f7d9f8

Content MD5sum

814bf694f9aad82788d279237ab142f7

File Size

1.6 GB

Submitted File Name

Multiome_ATAC_X050_G6_L006_P065_S36_L005_R3_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223HC3LT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

52958651

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM8373BGDE

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 79 years) posterior cingulate gyrus tissue; Homo sapiens (male, 80 years) posterior cingulate gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment; ... and 8 more samples