IGVFFI3305LAJV

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS2614NLMV(single-nucleus ATAC-seq (10x multiome))

Summary

R3 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X011_G6_P009_L001_R3

md5sum

64be7a68242139d51b9ebee21e9a2376

Content MD5sum

1977413faa2c063be1e59c055e261132

File Size

5.3 GB

Submitted File Name

Multiome_ATAC_X011_G6_L006_P009_S8_L001_R3_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HJ7TNDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

160967169

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM4940CSDA

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 84 years) posterior cingulate gyrus tissue associated with Parkinson's disease, mild cognitive impairment; Homo sapiens (male, 81 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 10 more samples