IGVFFI3302ARIG

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS4356BCAL(single-nucleus ATAC-seq (10x multiome))

Summary

R3 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP033_G5_P079_L008_R3

md5sum

6ed8d30dd0a2801fe9aad9cbc75a8e1a

Content MD5sum

a8e2e819d7e6a0128940c651081fcfd2

File Size

2.3 GB

Submitted File Name

Multiome_ATAC_RP033_G5_L005_P079_S29_L008_R3_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

19U7CA4LE

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

150

Read Count

37330271

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM2223HMDU

MultiplexedSample

posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, Parkinson's disease

multiplexed sample: Homo sapiens (male, 70 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (female, 70 years) substantia nigra tissue associated with Parkinson's disease; ... and 6 more samples